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Species belonging to selected taxon:

Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum



ABOUT THIS RECORD

ID: MNEST002458
species: Saccharum hybrid cultivar SP70-1143
miRNA family: MIR444
source: miRNEST

Taxonomy by NCBI:
Saccharum hybrid cultivar SP70-1143 Saccharum hybrid cultivar Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCAGTTGTTGCCTCAAGCTT

miRNA*
GCATGAGGCAGGAACTGCATT

mismatches: 2
bulges: 0

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pre-miRNA
TATTGCATATGGTGGCACCAAGCATGAGGCAGGAACTGCATTACTTGCAAGAAAGTCACAAAATCAATTGCAGGATCATACTTGTGGCTTTCTTGCAAGT
TGTGCAGTTGTTGCCTCAAGCTTGCTGCCTCCCTTTGCCAG


dot-bracket secondary structure
....(((...((.((((.(((((.((((((((.((((((((.(((((((((((((((((((.(((........))).....)))))))))))))))))))
.)))))))).)))))))).))))).))))..))..)))...



SIMILARITIES
miRBase ssp-MIR444b: 2e-55

PMRD tae-miR444: 3e-23

microPC miR444: 5e-47
UniProt sp|Q6Z6W2|MAD57_ORYSJ: 0.0001

RFAM MIR444: 9e-49
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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